Dear Anand, I'm sorry for the trouble! This seems to be a failure in refinement during rebuilding. It is possible that the error has been fixed since, so one solution is to download an even-more-recent version and try that. Another possibility is to re-run the job with "debug=True" and then a more complete error message should be printed. A third possibility is to send me ([email protected], off-list) all the files necessary to run the job and I will debug it here. A fourth possibility is to look in the file /home/anand/Autobuild/5/AutoBuild_run_1_/TEMP0/AutoBuild_run_1_/LAST.LOG which may have some more clues. All the best, Tom T On Jun 1, 2011, at 1:49 AM, B. Anand wrote:
Dear All,
I am using autobuild to rebuild the model after MR. However, it stops with the following error which am I not able to comprehend. Could you please shed some light on this error. Am using phenix version 1.7.1 (Release tag:743). Thanks.
With Best Regards, Anand
*************ERROR ENDING *******************
******************************************************************************** Failed to carry out AutoBuild_multiple_models:
******************************************************************************** Sorry, a subprocess has failed...
END OF LOG FILE /home/anand/Autobuild/5/AutoBuild_run_1_/TEMP0/RUN_FILE_1.log :
utoBuild Run 1 Tue May 31 01:00:15 2011
Build cycle 1 of 16 method:rebuild Initial rebuild cycle: just combining previous models or copying over initial PDB file
Using edited_pdb.pdb for rebuild, copied to unrefined.pdb_1 Refining model: unrefined.pdb_1 No refinement carried out (may need free R flags) Error message from phenix.refine: 'function' object has no attribute 'as_mtz_dataset' Refinement failed... *************ERROR ENDING *******************
******************************************************************************** Failed to carry out AutoBuild_build_cycle:
Initial phenix refinement of AutoBuild_run_1_/edited_pdb.pdb with exptl_fobs_phases_freeR_flags.mtz failed...quitting... /home/anand/Autobuild/5/AutoBuild_run_1_/TEMP0/AutoBuild_run_1_/LAST.LOG may have additional information... 'function' object has no attribute 'as_mtz_dataset' ********************************************************************************
*************ERROR ENDING *******************
********************************************************************************
*************ERROR ENDING *******************
-- B. Anand, Ph. D. Assistant Professor Department of Biotechnology Indian Institute of Technology Guwahati Guwahati 781039 Assam, India Email: [email protected] [email protected] Phone: +91-361-258 2223 Fax: +91-361-258 2249 Web: http://www.iitg.ernet.in/banand/ _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss