Hello Fulvio, this is because now it happens by default if real-space refinement is enabled (which is also the default). Do you have a specific reason to believe that this does not work as it should? Pavel On 5/27/14, 1:53 PM, Fulvio Saccoccia wrote:

Dear phenix users and developers, in the past I usually used the fix_rotamers=true options to fix some residue issues. Now, this option is lacking (I currently use the dev-1702 version of phenix) but I was wondering if some other option does replace it. In addition, I would like to know better how real_space_refinement works; is there any tutorial or presentation about it?

Thanks in advance

-- Fulvio Saccoccia, PhD Dept. of Biochemical Sciences Sapienza University of Rome 00185, Rome (Italy) Phone: +39 06 4991 0556 https://www.researchgate.net/profile/Fulvio_Saccoccia/?ev=hdr_xprf

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