Illegal instruction (core dumped)
Hi Folks, I just finished updating phenix-dev-944 to phenix-dev-975 version on Fedora Core 16 OS intel quad-core machine. When I run phenix from terminal "phenix.refine" I am receiving the following error message "Illegal instruction (core dumped)". This is the first time I saw this error. All the other programs run fine except phenix. I downloaded and installed it twice to see if it was an error of download but it still gives the same message. Is it an installation error or is it a bug in this version? Thanks. -- Hasan DeMirci
Dear Ralf, I used the "phenix-installer-dev-975-intel-linux-2.6-x86_64-fc16" for installation. Hasan- On Sat, Feb 4, 2012 at 10:42 PM, Ralf Grosse-Kunstleve < rwgrosse-kunstleve@lbl.gov> wrote:
-- Hasan DeMirci, Ph.D. Postdoctoral Fellow Department of Molecular Biology, Cellular Biology & Biochemistry Brown University 185 Meeting Street Providence, RI 02912 (401) 863-3652 lab (SFH) (401) 863-6124 lab (ship st) (401) 226-7852 cell Hasan_DeMirci@Brown.edu demircha99@gmail.com
Dear Ralf, uname -m is giving "x86_64" I just checked the installer for dev_944 version and apparently I used phenix-installer-dev-944-intel-linux-2.6-x86_64-fc15 instead of 16. hasan- On Sat, Feb 4, 2012 at 10:58 PM, Ralf Grosse-Kunstleve < rwgrosse-kunstleve@lbl.gov> wrote:
-- Hasan DeMirci, Ph.D. Postdoctoral Fellow Department of Molecular Biology, Cellular Biology & Biochemistry Brown University 185 Meeting Street Providence, RI 02912 (401) 863-3652 lab (SFH) (401) 863-6124 lab (ship st) (401) 226-7852 cell Hasan_DeMirci@Brown.edu demircha99@gmail.com
ok, that's a plausible explanation
do you want to try the 975 fc15 installer?
alternatively, you could try the source installer. run with
--nproc=<number-of-cores-you-have>
our fc16 installer is built on an AMD machine. i wonder if the resulting
binary is compatible with Intel chips. does your machine have AMD or Intel
chips?
On Sat, Feb 4, 2012 at 8:06 PM, Hasan Demirci
Dear Ralf, I will first try fc15 installer to see if it runs. My machine has intel quad-core chip. Thanks. hasan- PS: Phenix rocks. On Sat, Feb 4, 2012 at 11:11 PM, Ralf Grosse-Kunstleve < rwgrosse-kunstleve@lbl.gov> wrote:
-- Hasan DeMirci, Ph.D. Postdoctoral Fellow Department of Molecular Biology, Cellular Biology & Biochemistry Brown University 185 Meeting Street Providence, RI 02912 (401) 863-3652 lab (SFH) (401) 863-6124 lab (ship st) (401) 226-7852 cell Hasan_DeMirci@Brown.edu demircha99@gmail.com
participants (2)
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Hasan Demirci -
Ralf Grosse-Kunstleve