Hi Laurie, I'm sorry for the problem! This is a little difficult to debug because the problem has to do with Rosetta and Phenix, not just Phenix. What happens with this (if you are not using a mac, change the last part of this command to match what is in your rosetta_source/bin/ directory): $PHENIX_ROSETTA_PATH/rosetta_source/bin/mr_protocols.default.macosgccrelease This is the command to run Rosetta by itself. If this doesn't work, then there is some kind of problem in the installation. Let me know and I will put you in touch with someone from the Rosetta team to help debug it. All the best, Tom T

...

We installed latest phenix and latest rosetta last week. I ran test script: phenix_regression.wizards.test_command_line_rosetta_quick_tests and got the test failing at the prerefine because of missing shared libraries, as shown below in the FAQ (italics).

I tried again in both bash & csh after setting or exporting the environment variables shown below, but got the same exact error. If I do printenv the shell sees the new env var.

What should I try next?

THanks so much

Laurie Betts & CD Poon University of North Carolina

*Why does mr_rosetta bomb and say "error while loading shared libraries: libdevel.so: cannot open shared object file: No such file or directory ?

This may indicate that somewhere your system is defining the shared libraries that Rosetta needs, and these are for a place that is not where Rosetta expects them to be. You can try to ignore the previous definitions this way: If you are using the bash or sh shells:

export PHENIX_TRUST_OTHER_ENV=1

or csh (C-shell):

setenv PHENIX_TRUST_OTHER_ENV 1

in the script where you run mr_rosetta, or before you run it from the command line. * _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb