After phenix.refine stage I would like to get just the sa_omit map for the whole assymetric unit (nothing extra). How can I do it? Regards. Vladimir
Hi Tom, don't we need to add "maps_only=True" as well (as Manual suggests in section "Just make maps; don't do any building."; http://www.phenix-online.org/documentation/autobuild.htm) ? I'm asking because the original question was specific about it: compute map and "nothing extra". Thanks, Pavel. On 10/13/2008 2:17 PM, Thomas C. Terwilliger wrote:
Hi Pavel and Vladimir, After all this discussion...I think there is something wrong with the composite omit maps in the current version...I will check this out. If you instead just omit around the atoms in a pdb file with "omit_box_pdb=target.pdb" that seems fine however. I'm sorry for the problem. All the best, Tom T
Hi Pavel and Vladimir, After all this discussion...I think there is something wrong with the composite omit maps in the current version. They do not finish correctly...I will check this out. If you instead just omit around the atoms in a pdb file with "omit_box_pdb=target.pdb" that seems fine however. I'm sorry for the problem. All the best, Tom T
participants (3)
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Pavel Afonine -
pletnev＠hwi.buffalo.edu -
Thomas C. Terwilliger