Bug in phenix.carbo_load in latest nightlies
Hi all, I've been using the carbo_load tool to add in GlcNAc residues to Asn side chains and have noticed that in recent nightlies there is a bug that throws up the following error message (this occurs even if carbo_load is just run in "mode 1"): Traceback (most recent call last): File "/Applications/phenix-dev-1924/build/../modules/elbow/elbow/command_line/carbo_load.py", line 705, in <module> run(args) File "/Applications/phenix-dev-1924/build/../modules/elbow/elbow/command_line/carbo_load.py", line 417, in run from elbow.saccharide import carbohydrate_classes File "/Applications/phenix-dev-1924/modules/elbow/elbow/saccharide/carbohydrate_classes.py", line 28, in <module> from phenix.ligands.DensityBlobsClassConnectivity import DensityBlobsClassConnectivity ImportError: No module named DensityBlobsClassConnectivity I get this with dev-1894 and dev-1924 but not the last stable 1.9-1692. Cheers, Roger -- Roger B. Dodd, PhD Cambridge Institute for Medical Research University of Cambridge School of Clinical Medicine Wellcome Trust/MRC Building Cambridge Biomedical Campus Hills Road Cambridge CB2 0XY
Roger
I'll fix this ASAP. In the meantime, please use a version that works.
Cheers
Nigel
---
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : [email protected]
Fax : 510-486-5909 Web : CCI.LBL.gov
On Tue, Jan 20, 2015 at 3:58 AM, Roger Dodd
Hi all,
I've been using the carbo_load tool to add in GlcNAc residues to Asn side chains and have noticed that in recent nightlies there is a bug that throws up the following error message (this occurs even if carbo_load is just run in "mode 1"):
Traceback (most recent call last): File "/Applications/phenix-dev-1924/build/../modules/elbow/elbow/command_line/carbo_load.py", line 705, in <module> run(args) File "/Applications/phenix-dev-1924/build/../modules/elbow/elbow/command_line/carbo_load.py", line 417, in run from elbow.saccharide import carbohydrate_classes File "/Applications/phenix-dev-1924/modules/elbow/elbow/saccharide/carbohydrate_classes.py", line 28, in <module> from phenix.ligands.DensityBlobsClassConnectivity import DensityBlobsClassConnectivity ImportError: No module named DensityBlobsClassConnectivity
I get this with dev-1894 and dev-1924 but not the last stable 1.9-1692.
Cheers,
Roger
-- Roger B. Dodd, PhD Cambridge Institute for Medical Research University of Cambridge School of Clinical Medicine Wellcome Trust/MRC Building Cambridge Biomedical Campus Hills Road Cambridge CB2 0XY
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participants (2)
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Nigel Moriarty
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Roger Dodd