mmCIF file must contain at least one data block
I am getting this thie error message mmCIF file must contain at least one data block when trying to run readyset or phenixrefine I cannot find anything wrong wqith my input files. What is the problem? Ursula -- Ursula Schulze-Gahmen, Ph.D. Project Scientist UC Berkeley, QB3 360 Stanley Hall #3220 Berkeley, CA 94720-3220 (510) 643 9491
Hi Ursula, most likely this is an admittedly obscure indication of the fact that some of input files that you gave to phenix.refine is corrupted in some way. If you send me all inputs (and tel how you run the program) then I will try to figure out. Pavel On 4/22/15 11:33 AM, Ursula Schulze-Gahmen wrote:
I am getting this thie error message
mmCIF file must contain at least one data block when trying to run readyset or phenixrefine
I cannot find anything wrong wqith my input files. What is the problem?
Ursula
-- Ursula Schulze-Gahmen, Ph.D. Project Scientist UC Berkeley, QB3 360 Stanley Hall #3220 Berkeley, CA 94720-3220 (510) 643 9491
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Hi all,
Did you find a resolution to this problem? I just got the same error.
What prompted it was including a new ligand that I created files (.pdb,
.cif, .etc) for using eLBOW from either an .sdf file or a smiles string.
Thanks,
Dave
On Wed, Apr 22, 2015 at 11:52 AM, Pavel Afonine
Hi Ursula,
most likely this is an admittedly obscure indication of the fact that some of input files that you gave to phenix.refine is corrupted in some way. If you send me all inputs (and tel how you run the program) then I will try to figure out.
Pavel
On 4/22/15 11:33 AM, Ursula Schulze-Gahmen wrote:
I am getting this thie error message
mmCIF file must contain at least one data block when trying to run readyset or phenixrefine
I cannot find anything wrong wqith my input files. What is the problem?
Ursula
-- Ursula Schulze-Gahmen, Ph.D. Project Scientist UC Berkeley, QB3 360 Stanley Hall #3220 Berkeley, CA 94720-3220 (510) 643 9491
_______________________________________________ phenixbb mailing [email protected]http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
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Dave, it looks like problem with one of the input files you use. If you send me all files and tell me how to reproduce the problem then I might be able to be more specific in diagnosing the problem. Pavel On 12/18/15 00:55, David Shin wrote:
Hi all,
Did you find a resolution to this problem? I just got the same error. What prompted it was including a new ligand that I created files (.pdb, .cif, .etc) for using eLBOW from either an .sdf file or a smiles string.
Thanks,
Dave
On Wed, Apr 22, 2015 at 11:52 AM, Pavel Afonine
mailto:[email protected]> wrote: Hi Ursula,
most likely this is an admittedly obscure indication of the fact that some of input files that you gave to phenix.refine is corrupted in some way. If you send me all inputs (and tel how you run the program) then I will try to figure out.
Pavel
On 4/22/15 11:33 AM, Ursula Schulze-Gahmen wrote:
I am getting this thie error message
mmCIF file must contain at least one data block when trying to run readyset or phenixrefine
I cannot find anything wrong wqith my input files. What is the problem?
Ursula
-- Ursula Schulze-Gahmen, Ph.D. Project Scientist UC Berkeley, QB3 360 Stanley Hall #3220 Berkeley, CA 94720-3220 (510) 643 9491 tel:%28510%29%20643%209491
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participants (3)
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David Shin
-
Pavel Afonine
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Ursula Schulze-Gahmen