Hi there, My Phenix.Refine run crashes because of non-availability of dictionary file for "ACP", a non-hydrolyzable ATP. Could this ligand be added to the next nightly build? Phenix.Refine suggested using "ReadySet", but that also failed. I sent the error reports to [email protected], all emails bounced back. Refmac runs fine. Thanks! -Gyan -- Gyanendra Kumar, PhD Associate Scientist, St. Jude Children's Research Hospital, Department of Structural Biology, 262, Danny Thomas Place, MS-311 Memphis, TN 38105 Cell: 631-875-9189 https://www.linkedin.com/in/gyanendrakumar https://scholar.google.com/gyanendrakumar https://scholar.google.com/citations?user=lnil0IQAAAAJ&hl=en https://www.researchgate.net/profile/Gyanendra_Kumar3 http://stjude.academia.edu/GyanendraKumar -------------------------------------------------------
You can use eLBOW to create a restraints file. If that does not work send
me your model.
Cheers
Nigel
---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : [email protected]
Fax : 510-486-5909 Web : CCI.LBL.gov
On Thu, Nov 16, 2017 at 1:33 PM, Gyanendra Kumar
Hi there,
My Phenix.Refine run crashes because of non-availability of dictionary file for "ACP", a non-hydrolyzable ATP.
Could this ligand be added to the next nightly build?
Phenix.Refine suggested using "ReadySet", but that also failed.
I sent the error reports to [email protected], all emails bounced back.
Refmac runs fine.
Thanks!
-Gyan
-- Gyanendra Kumar, PhD Associate Scientist, St. Jude Children's Research Hospital, Department of Structural Biology, 262, Danny Thomas Place, MS-311 Memphis, TN 38105 Cell: 631-875-9189 <(631)%20875-9189> https://www.linkedin.com/in/gyanendrakumar https://scholar.google.com/gyanendrakumar https://scholar.google.com/citations?user=lnil0IQAAAAJ&hl=en https://www.researchgate.net/profile/Gyanendra_Kumar3 http://stjude.academia.edu/GyanendraKumar -------------------------------------------------------
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Hi Gyan,
If you are unsure how to run eLBOW, have a look at Nigel's tutorial:
tutorial eLBOW https://www.youtube.com/watch?v=8qVYTUVKlbQ
Best wishes,
Dorothee
On Thu, Nov 16, 2017 at 1:33 PM, Gyanendra Kumar
Hi there,
My Phenix.Refine run crashes because of non-availability of dictionary file for "ACP", a non-hydrolyzable ATP.
Could this ligand be added to the next nightly build?
Phenix.Refine suggested using "ReadySet", but that also failed.
I sent the error reports to [email protected], all emails bounced back.
Refmac runs fine.
Thanks!
-Gyan
-- Gyanendra Kumar, PhD Associate Scientist, St. Jude Children's Research Hospital, Department of Structural Biology, 262, Danny Thomas Place, MS-311 Memphis, TN 38105 Cell: 631-875-9189 <(631)%20875-9189> https://www.linkedin.com/in/gyanendrakumar https://scholar.google.com/gyanendrakumar https://scholar.google.com/citations?user=lnil0IQAAAAJ&hl=en https://www.researchgate.net/profile/Gyanendra_Kumar3 http://stjude.academia.edu/GyanendraKumar -------------------------------------------------------
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participants (3)
-
Dorothee Liebschner
-
Gyanendra Kumar
-
Nigel Moriarty