molprobity todo list and coot integration in linux
Hi, Is a difference in the way the GUI molprobity TODO list is displayed between linux and Mac OSX . I am running 1.6.289 on both ...and have coot with scheme and python scripting installed, On mac OSX , phenix starts up coot with the molecule and maps loaded after a phenix.validate and a TO-DO list in a separate GUI window In Linux these separate To-do list windows dont seem to open . ..I have looked everywhere and the dont seem burried behind something else, Is there some setting I need to toggle to have these popup , sortable todo lists for molprobity assisted rebuilding on Linux systems? Thanks for your help Hari
On Mar 9, 2010, at 10:34 AM, hari jayaram wrote:
Hi, Is a difference in the way the GUI molprobity TODO list is displayed between linux and Mac OSX . I am running 1.6.289 on both ...and have coot with scheme and python scripting installed,
On mac OSX , phenix starts up coot with the molecule and maps loaded after a phenix.validate and a TO-DO list in a separate GUI window
In Linux these separate To-do list windows dont seem to open . ..I have looked everywhere and the dont seem burried behind something else,
Is there some setting I need to toggle to have these popup , sortable todo lists for molprobity assisted rebuilding on Linux systems?
Preferences::Graphics::Show validation results in Coot GUI FYI, I mostly stopped working on this after I figured out how to recenter Coot from PHENIX, so it only includes the results from the "Model validation" tab - however, I'm happy to extend this to include the geometry and real-space CC analyses if people would find this useful. -------------------- Nathaniel Echols Lawrence Berkeley Lab 510-486-5136 [email protected]
Thanks Nat,
I didnt realize that the phenix tables also recenter coot when you click on
any item in the validate list..So since this feature works perfectly well I
dont see any need to have a separate popup GUI todo list.
Just curious , speaking of coot and phenix communicating , Is it true that
coot and phenix communicate by XML-RPC ? ..
Hari
On Tue, Mar 9, 2010 at 10:43 AM, Nathaniel Echols
On Mar 9, 2010, at 10:34 AM, hari jayaram wrote:
Hi, Is a difference in the way the GUI molprobity TODO list is displayed between linux and Mac OSX . I am running 1.6.289 on both ...and have coot with scheme and python scripting installed,
On mac OSX , phenix starts up coot with the molecule and maps loaded after a phenix.validate and a TO-DO list in a separate GUI window
In Linux these separate To-do list windows dont seem to open . ..I have looked everywhere and the dont seem burried behind something else,
Is there some setting I need to toggle to have these popup , sortable todo lists for molprobity assisted rebuilding on Linux systems?
Preferences::Graphics::Show validation results in Coot GUI
FYI, I mostly stopped working on this after I figured out how to recenter Coot from PHENIX, so it only includes the results from the "Model validation" tab - however, I'm happy to extend this to include the geometry and real-space CC analyses if people would find this useful.
-------------------- Nathaniel Echols Lawrence Berkeley Lab 510-486-5136 [email protected]
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participants (2)
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hari jayaram -
Nathaniel Echols