Normally you should be able to get the list of options by just running the command without parameters. It may, of course, be incomplete: the version that I have lists both --show-adp-statistics and --show-geometry-statistics as "Show complete ADP (B-factors) statistics.", which is unlikely. On Fri, 2011-10-21 at 09:45 -0700, Abhinav Kumar wrote:

Hi,

I had been using the pdbtools to obtain the rmsd on various geometry parameters using the command: phenix.pdbtools my.pdb --show-geometry-statistics

Now pdbtools does not recognize the option "--show-geometry-statistics"

What is the option now?

I am using phenix-1.7.2-869. --

Thanks, Abhinav

JCSG@SSRL, SLAC Phone: (650) 926-2992 Fax: (650) 926-3292

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