Dear all, I encounter the following error when running phenix.table_one from the command line (RHEL 6.3 64-bit, phenix-dev-1769): andreas@csbstereo in blah: phenix.table_one Traceback (most recent call last): File "/csb/soft/Linux64/share/phenix-dev-1769/build/intel-linux-2.6-x86_64/../../phenix/phenix/command_line/table_one.py", line 6, in <module> phenix.automation.table_one.run(sys.argv[1:], auto_extract_labels=True, AttributeError: 'module' object has no attribute 'run' Aunt Google insists that this is "a circular import issue". What do the developers say? Thanks. Andreas -- Andreas Förster Crystallization and X-ray Facility Manager Centre for Structural Biology Imperial College London
On Sat, Aug 23, 2014 at 11:54 AM, Andreas Förster
I encounter the following error when running phenix.table_one from the command line (RHEL 6.3 64-bit, phenix-dev-1769):
andreas@csbstereo in blah: phenix.table_one Traceback (most recent call last): File "/csb/soft/Linux64/share/phenix-dev-1769/build/intel- linux-2.6-x86_64/../../phenix/phenix/command_line/table_one.py", line 6, in <module> phenix.automation.table_one.run(sys.argv[1:], auto_extract_labels=True, AttributeError: 'module' object has no attribute 'run'
Aunt Google insists that this is "a circular import issue".
What do the developers say?
"Oops" I rewrote the program a few months ago to be an extension of MolProbity, but I forgot to remove the old launcher. It'll be fixed in the next build. You can patch your installation by doing this: cd /csb/soft/Linux64/share/phenix-dev-1769/ rm -rf phenix/phenix/command_line/table_one.py cd build/intel-linux-2.6-x86_64 libtbx.refresh -Nat
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