Dear Experts I am refining my structures in windows mode and every time i got this crash message i do not know how to solve this issue? If any one encountered this problem kindly suggest me how to solve it. While when i refine with refmac the file proceeds smoothly but i want to final refinement in phenix due to utilize some parameters.its end like this: Exporting results ============================== Writing refined structure to PDB file: C:\Documents and Settings\pc user\Desktop\Refine_2\jbu_refine_2.pdb n_use = 7514 n_use_u_both = 7514 n_use_u_iso = 0 n_use_u_aniso = 0 n_grad_site = 0 n_grad_u_iso = 0 n_grad_u_aniso = 0 n_grad_occupancy = 331 n_grad_fp = 0 n_grad_fdp = 0 total number of scatterers = 7514 After that its not produce the map file and gave errore crash mesage file attached. Your suggestion highly obliged I would be very thankful to you Best Regards AFSHAN
On Wed, Jul 25, 2012 at 4:43 AM, Afshan Begum
I am refining my structures in windows mode and every time i got this crash message i do not know how to solve this issue? If any one encountered this problem kindly suggest me how to solve it. While when i refine with refmac the file proceeds smoothly but i want to final refinement in phenix due to utilize some parameters.its end like this:
This is either a very serious bug, or you're running out of memory - I can't tell which (Windows doesn't really work like other OSes), but that particular piece of code that's crashing does eat up a lot of memory. In case it's a bug, could you please send us (off-list!) all of the input files, including the .eff file written out by the program, so we can try to reproduce the problem? You should be able to circumvent the crash by opening the map coefficients window (third configuration tab) and unchecking "Fill missing F-obs with F-calc" for all maps you see there. -Nat
participants (2)
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Afshan Begum -
Nathaniel Echols