The Basics (Essential reading)
Graphical User Interface Tour sequence
GUI Demonstration sequence
The PHENIX Graphical User Interface
Substructure Determination (HySS)
Structure Refinement (phenix.refine)
electron Ligand Builder and Optimiser Workbench (eLBOW)
Xray data checks (mmtbx.xtriage)
Explore metric symmetry (iotbx.explore_metric_symmetry)