[cctbxbb] Automated Travis CI for phenix

[Oleg Sobolev]

Hi Elliot,

phenix.fmodel and phenix.maps scripts are fully available in cctbx:

cctbx_project/mmtbx/command_line/fmodel.py
cctbx_project/mmtbx/command_line/maps.py

and have zero dependencies from Phenix closed-source repository.
You can just call them with cctbx-aware python in your software.

Best regards,
Oleg Sobolev.

On Thu, May 24, 2018 at 3:37 AM, Elliot Nelson <elliot.nelson at dtc.ox.ac.uk>
wrote:

> Hi
>
>
> I'm looking to run automated integration tests for software, which
> currently runs from CCTBX, but also calls phenix scripts. These are
> phenix.fmodel and phenix.maps. Currently I have a docker image which
> sources CCP4 to get access to CCTBX, but this will not allow me to test
> stuff reliant on the phenix scripts.
>
> As Phenix is not downloadable on command line (CCP4 build can be got
> through wget command), it is not obvious as the best way to setup up such a
> docker build on travis CI. I wouldn't want to source a local download of
> the software as i am unsure of the licesining implications of hosting a
> copy of the software.
>
>
> Any suggestions would be greatly appreciated?
>
>
> Software (with dockerfile): https://github.com/nelse003/exhaustive_search
>
> <https://github.com/nelse003/exhaustive_search>Current docker image:
> https://hub.docker.com/r/nelse003/ccp4_phenix_docker/
>
>
> Thanks
>
>
> Elliot
>
>
> DPhil Student, Systems Approaches to Biomedical Science
> <http://www.sabsidc.ox.ac.uk/>
> Protein Crystallography <http://www.thesgc.org/groupprofile/9489>,
> Structural Genomics Consortium, NDM,  University of Oxford
> Oxford Protein Informatics Group <http://opig.stats.ox.ac.uk/>,
> Department of Statistics, University of Oxford
>
>
> _______________________________________________
> cctbxbb mailing list
> cctbxbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/cctbxbb
>
>
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