[phenixbb] Can PHENIX write the peak list to a PDB file?

Pavel Afonine pafonine at lbl.gov
Fri Dec 3 23:12:16 PST 2010

  Hi Morten,

no, it's not yet there. A phenix.refine run outputs anomalous difference 
map, or you can use phenix.maps for this. This map will show the peaks 
you are interested in. Although I see how formatting this information as 
a PDB file may be somewhat helpful, I wasn't seeing it as the highest 
priority and so it's still pending in the list of things to do. I do not 
know what it takes to do the analogous job using ccp4, so can't really 
comment on this.


On 12/3/10 12:44 PM, Morten Grøftehauge wrote:
> Dear Pavel,
> Is this in? I wanted to do an anomalous peak search in a way that was 
> faster than the CCP4 route but it doesn't seem to be available.
> Sincerely,
> Morten Grøftehauge

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