[phenixbb] secondary structure restraints
nechols at lbl.gov
Mon Mar 28 07:36:32 PDT 2011
On Mon, Mar 28, 2011 at 6:50 AM, Bradley Hintze <bradley.hintze at duke.edu> wrote:
> Hello PHENIX developers.
> When I run phenix.secondary_structure_restraints 1ZY7.pdb format=refmac I
> get this error:
> Traceback (most recent call last):
> line 6, in <module>
> line 766, in run
> if (len(proxies) == 0) :
> NameError: global name 'proxies' is not defined
> Am I missing something?
Nope, I was. It'll be fixed tomorrow (and I'll add a regression
test). Version 1.7 should work, although it is somewhat less smart
about extracting the hydrogen bonding atoms.
> Also, is there anything like '-h' on phenix.secondary_structure_restraints
> so that I can figure out the different options?
There was supposed to be, but I think I broke this too. Usually if
you run one of these programs without arguments it should tell you
something informative, but in this case it just complains about a PDB
file - anyway, easily fixed.
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