[phenixbb] idealizing structure

[Oleg Sobolev]

Hi,

The GUI version is available under "Model tools" and called "Geometry
minimization".

Best regards,
Oleg Sobolev.

On Mon, Apr 27, 2015 at 12:57 PM, Kgosisejo, Oarabile <o.kgosisejo at usask.ca>
wrote:

> Hi,
>
> Is there only the command line version of this or the GUI usage is
> available as well?
>
> Best Regards,
>
> Oarabile Kgosisejo
> ________________________________________
> From: phenixbb-bounces at phenix-online.org [
> phenixbb-bounces at phenix-online.org] on behalf of Pavel Afonine [
> pafonine at lbl.gov]
> Sent: January 20, 2015 1:58 PM
> To: PC; PHENIX list
> Subject: Re: [phenixbb] idealizing structure
>
> >   Is there a way to "idealize" a structure in Phenix?
> >
> > I mean, ideal omega, all residues within allowed regions of Ramachandran
> maps, no clashes..etc. I know it won't fit the map well but I would like to
> see what it looks like.
>
> Yes, using phenix.geometry_minimization :
>
> http://phenix-online.org/documentation/reference/geometry_minimization.html
>
> Pavel
>
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