[phenixbb] Separate cif files for the same nucleoside analog in it's monophosphate or triphosphate form?

Nigel Moriarty nwmoriarty at lbl.gov
Tue Feb 23 16:52:27 PST 2016


Can you send me the PDB (or section with the example) so I can make an
informed response.



Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Tue, Feb 23, 2016 at 2:11 PM, Zhe Li <lizhelizhelizhe at hotmail.com> wrote:

> Hi,
> I’m working on several protein/ligand structures, where the ligand is a
> novel nucleoside analog inhibitor. In each structure the ligand is either
> non-covalently bound as a ligand-5’-triphosphate (TP), or covalently bound
> to the protein as ligand-5’-monophosphate (MP). Do I need to create
> different cif file for ligand-MP and ligand-TP, or phenix can recognize the
> phosphates and there is no need for that?
> Thank you.
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