[phenixbb] Dots and vectors of cryo em validation in Coot
pemsley at mrc-lmb.cam.ac.uk
Fri May 17 02:55:24 PDT 2019
On 15/05/2019 17:36, Ahmad Khalifa wrote:
> In the manual, it says the red dots are clashes, what about the yellow dots and the magenta dashes
> (vectors)? I would also appreciate if you give an input on how you fix them.
The magenta dashed lines are close  contacts that are probably hydrogen bonds and the yellow dashed lines
are close contacts that are not hydrogen bonds. Refinement won't necessarily remove yellow contacts from a
 "close" is a user-defined parameter.
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