[phenixbb] phenix installation problem

[Billy Poon]

Hi Adam,

In the installer directory, there should be a "base_tmp" directory with
some log files. Can you send me those log files? They will show the actual
error.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Fax: (510) 486-5909
Web: https://phenix-online.org


On Thu, Dec 2, 2021 at 12:11 PM Pavel Afonine <pafonine at lbl.gov> wrote:

> Hi,
>
> try latest version:
>
> https://phenix-online.org/download/nightly_builds.cgi
>
> Pavel
> On 11/30/21 18:10, princeadam at 163.com wrote:
>
>
> Dear all
>
> I tried to install Phenix on my virtual machine(Ubuntu) in win11. And got
> the following error message.
>
>
> ==========================================================================
>
>                           Phenix Installation
>
>
>
>                           version: 1.19.2-4158
>
>                      machine type: intel-linux-2.6-x86_64
>
>                        OS version: 5.11.0-40-generic
>
>                       destination: /usr/local/phenix-1.19.2-4158
>
>                   # of processors: 1
>
>
> =========================================================================
>
>
>
> Configuring Phenix components...
>
> Traceback (most recent call last):
>
>   File "./bin/install.py", line 245, in <module>
>
>     installer(sys.argv[1:]).install()
>
>   File
> "/media/sf_Virtual_Shared_Folder/phenix-installer-1.19.2-4158-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 200, in install
>
>     self.install_from_binary()
>
>   File
> "/media/sf_Virtual_Shared_Folder/phenix-installer-1.19.2-4158-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 349, in install_from_binary
>
>     self.reconfigure(log=log)
>
>   File
> "/media/sf_Virtual_Shared_Folder/phenix-installer-1.19.2-4158-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 431, in reconfigure
>
>     call(args=args, log=log, verbose=self.options.verbose)
>
>   File
> "/media/sf_Virtual_Shared_Folder/phenix-installer-1.19.2-4158-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py",
> line 55, in call
>
>     raise RuntimeError("Call to &apos;%s&apos; failed with exit code %d" %
> (args, rc))
>
> RuntimeError: Call to
> &apos;/usr/local/phenix-1.19.2-4158/conda_base/bin/python
> /usr/local/phenix-1.19.2-4158/modules/cctbx_project/libtbx/configure.py
> --current_working_directory /usr/local/phenix-1.19.2-4158/build
> --command_version_suffix 1.19.2-4158 phenix phaser solve_resolve labelit
> dials xia2 iota prime amber_adaptbx --use_conda&apos; failed with exit code
> 127
>
>
>
>
> I searched phenixbb, and got the similar information from *http://www.phenix-online.org/pipermail/phenixbb/2015-November/022456.html
> <http://www.phenix-online.org/pipermail/phenixbb/2015-November/022456.html>*
>
> It's a pity , that the answer was not suiable for me.
>
> I have root access to write to usr/local. And under
> /usr/local/phenix-1.19.2-4158 , I can see four folders:build, conda_base,
> doc, modules.
>
> Any one has suggestions?
>
>
> all the best
>
> Adam
>
>
>
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