[phenixbb] Reminder: Phenix user workshop at the ACA2022 in Portland

[Dorothee Liebschner]

Dear Colleagues,



The Phenix developers will be holding a day-long satellite workshop on July
29th, prior to the ACA meeting in Portland, Oregon. This Phenix user
workshop will focus on using predicted models for crystallography and
cryo-EM.


*Please note: Registration closes on July 8th!*



The format of the workshop will be demos of the use of Phenix programs
combined with slides to explain the theory. We expect an interactive
meeting where attendees can ask questions for the Phenix team to answer. Topics
will cover aspects of macromolecular structure determination in Phenix.



For registration, see the ACA 2022 website:
https://www.acameeting.com/aca-wk2. You need to register for the main
meeting in order to participate in the workshop. This is an in-person
workshop (no hybrid option).



Lecturers: Pavel Afonine, Dorothee Liebschner, Billy Poon, Tom Terwilliger



Looking forward to seeing you there!


The Phenix team

Detailed Program:



8:00

Welcome: Introduction to Phenix, Introduction to the GUI, set up Phenix

8:45

Overview -- Strategy for X-ray or Cryo-EM structure determination using
AlphaFold models (lecture)

9:15

Predicting your structure with AlphaFold and trimming it with
ProcessPredictedModel (demo)

9:45

Solving an X-ray structure automatically by MR with PredictAndBuild (demo
with pre-computed data)

10:15

Break

10:45

Evaluating X-ray data with Xtriage

11:00

Xray refinement (lecture)

11:30

Xray refinement with AlphaFold reference models (demo)

12:00

Lunch

13:00

Ligands (lecture & demo)

13:30

Cryo-EM Data evaluation with Mtriage (short lecture & demo)

13:45

Cryo-EM map manipulations, map improvement with LocalAnisoSharpen and
ResolveCryoEM (demo)

14:30

Break

15:00

Automatic cryo-EM map interpretation with PredictAndBuild (demo with
pre-computed data)

15:30

Cryo-EM refinement (lecture and demo)

16:00

Model validation (lecture & demo)

16:30

Q&A

16:50

finish: workshop survey and wrap up

-- 
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org
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