Mark You can use edits (for a one of) or cif_links. Coot can not display all links that Phenix uses. We are working on a display for this. Cheers Nigel --- Nigel W. Moriarty Building 33R0349, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Email : [email protected] Web : CCI.LBL.gov ORCID : orcid.org/0000-0001-8857-9464 On Fri, Feb 23, 2024 at 5:29 AM Mark Saper wrote:

I need to create a phosphodiester bond between O3’ of a DNA nucleotide and P of a 3DR HETATM ligand (a modified nucleotide). I also need to delete O3P of the 3DR nucleotide. How can I create this restraint?

Also, how can I get COOT to display this bond?

Thanks, Mark _____________________ *Mark A. Saper, Ph.D.* Dept of Microbiology and Molecular Genetics Hebrew University Faculty of Medicine [email protected] | +972 52 815-0480

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