[cctbxbb] Boost broken on mac?
markus.gerstel at diamond.ac.uk
markus.gerstel at diamond.ac.uk
Thu Mar 24 08:05:20 PDT 2016
Dials west is currently observing test failures on Mac related to Boost.
To exclude any errors on our side I have run things twice clean from bootstrap:
One of a number of affected tests:
libtbx.python cctbx/xray/boost_python/tst_xray.py
show_stack(1): /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/cctbx/xray/boost_python/tst_xray.py(381) exercise_conversions
show_stack(2): /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/cctbx/xray/boost_python/tst_xray.py(1993) run
show_stack(3): /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/cctbx/xray/boost_python/tst_xray.py(2009) <module>
libc backtrace (29 frames, most recent call last):
30 Python 0x0000000100000d71 Python + 3441
29 Python 0x0000000100000e58 Python + 3672
28 Python 0x00000001000ef06f Py_Main + 3135
27 Python 0x00000001000d78be PyRun_SimpleFileExFlags + 702
26 Python 0x00000001000d7d84 PyRun_FileExFlags + 164
25 Python 0x00000001000aea06 PyEval_EvalCode + 54
24 Python 0x00000001000af244 PyEval_EvalCodeEx + 2100
23 Python 0x00000001000b25c8 PyEval_EvalFrameEx + 12280
22 Python 0x00000001000b6ab6 fast_function + 118
21 Python 0x00000001000af244 PyEval_EvalCodeEx + 2100
20 Python 0x00000001000b25c8 PyEval_EvalFrameEx + 12280
19 Python 0x00000001000b6ab6 fast_function + 118
18 Python 0x00000001000af244 PyEval_EvalCodeEx + 2100
17 Python 0x00000001000b4198 PyEval_EvalFrameEx + 19400
16 Python 0x0000000100011023 PyObject_Call + 99
15 Python 0x000000010006ad8b type_call + 347
14 Python 0x00000001000708af slot_tp_init + 175
13 Python 0x0000000100011023 PyObject_Call + 99
12 Python 0x000000010001f0d8 instancemethod_call + 232
11 Python 0x0000000100011023 PyObject_Call + 99
10 libboost_python.dylib 0x0000000101888663 boost::python::objects::function_call(_object*, _object*, _object*) + 83
9 libboost_python.dylib 0x000000010188ce71 boost::python::handle_exception_impl(boost::function0<void>) + 81
8 libboost_python.dylib 0x00000001018889ca boost::detail::function::void_function_ref_invoker0<boost::python::objects::(anonymous namespace)::bind_return, void>::invoke(boost::detail::function::function_buffer&) + 26
7 libboost_python.dylib 0x000000010188693a boost::python::objects::function::call(_object*, _object*) const + 874
6 cctbx_xray_ext.so 0x0000000107c8e1c5 boost::python::detail::caller_arity<3u>::impl<void (*)(_object*, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&), boost::python::default_call_policies, boost::mpl::vector4<void, _object*, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&> >::operator()(_object*, _object*) + 229
5 cctbx_xray_ext.so 0x0000000107c91f44 boost::python::objects::make_holder<2>::apply<boost::python::objects::value_holder<cctbx::xray::array_f_sq_as_f<cctbx::xray::f_sq_as_f_xtal_3_7, double> >, boost::mpl::joint_view<boost::python::detail::drop1<boost::python::detail::type_list<scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&, boost::python::optional<double const&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional<double const&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> > >::execute(_object*, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&, scitbx::af::const_ref<double, scitbx::af::trivial_accessor> const&) + 100
4 ??? 0x0000000000000002 0x0 + 2
3 libsystem_platform.dylib 0x00007fff8caabeaa _sigtramp + 26
2 boost_python_meta_ext.so 0x0000000101841370 initboost_python_meta_ext + 0
Floating-point error (Python and libc call stacks above)
This crash may be due to a problem in any imported
Python module, including modules which are not part
of the cctbx project. To disable the traps leading
to this message, define these environment variables
(e.g. assign the value 1):
BOOST_ADAPTBX_FPE_DEFAULT
BOOST_ADAPTBX_SIGNALS_DEFAULT
This will NOT solve the problem, just mask it, but
may allow you to proceed in case it is not critical.
Any ideas?
Best wishes,
-Markus
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