[cctbxbb] scipy module

[Billy Poon]

Also, if you already have cctbx installed, you can install scipy into that
version of python by,

cctbx.python -m pip install scipy

That command places scipy in the same location as the other cctbx
dependencies.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Mon, Nov 6, 2017 at 12:32 PM, Peter Zwart <PHZwart at lbl.gov> wrote:

> I find the easiest way to do this is to install scipy with pip, and use
> the python associated with that install to be used as the python to compile
> the cctbx under.
>
> P
>
> On 6 November 2017 at 12:18, Magnus Andersson <
> magnus.andersson at scilifelab.se> wrote:
>
>> Hello,
>>
>> I am not normally using cctbx but I’m trying to run a script that imports
>> modules as follows:
>>
>> import sys,io,os
>> import subprocess
>> import numpy
>> import pickle
>> import math
>> import pylab
>> #import pymol
>> import time
>> import scipy
>> import iotbx.pdb
>> import cctbx
>> import mmtbx.model
>> from scipy.optimize import fmin, fmin_cg, leastsq
>> from scipy.interpolate import interp1d
>> import datetime
>> from numpy.random import random_sample
>> from cctbx.array_family import flex
>> from scitbx.math import superpose
>>
>> I have installed cctbx and run with cctbx.python.
>>
>> How can I import scipy into the cctbx python?
>>
>> Cheers,
>>
>> Magnus
>>
>>
>> ####
>> Magnus Andersson, Docent, Ph.D.
>>
>> Email: magnus.andersson at scilifelab.se
>> Phone: 0769469872
>>
>> Mailing address:
>> Science For Life Laboratory
>> Alpha 6
>> Box 1031
>> 171 21 Solna
>>
>> Visiting address:
>> Tomtebodavägen 23A
>> 171 65 Solna
>>
>>
>> _______________________________________________
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>> http://phenix-online.org/mailman/listinfo/cctbxbb
>>
>>
>
>
> --
> -----------------------------------------------------------------
> P.H. Zwart
> Staff Scientist
> Molecular Biophysics and Integrated Bioimaging &
> Center for Advanced Mathematics for Energy Research Applications
> Lawrence Berkeley National Laboratories
> 1 Cyclotron Road, Berkeley, CA-94703, USA
> Cell: 510 289 9246 <(510)%20289-9246>
>
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