[cctbxbb] scipy module

[Magnus Andersson]

This works!

Thanks,

Magnus

> On 06 Nov 2017, at 21:39, Billy Poon <bkpoon at lbl.gov> wrote:
> 
> Also, if you already have cctbx installed, you can install scipy into that version of python by,
> 
> cctbx.python -m pip install scipy
> 
> That command places scipy in the same location as the other cctbx dependencies.
> 
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org <https://phenix-online.org/>
> On Mon, Nov 6, 2017 at 12:32 PM, Peter Zwart <PHZwart at lbl.gov <mailto:PHZwart at lbl.gov>> wrote:
> I find the easiest way to do this is to install scipy with pip, and use the python associated with that install to be used as the python to compile the cctbx under. 
> 
> P
> 
> On 6 November 2017 at 12:18, Magnus Andersson <magnus.andersson at scilifelab.se <mailto:magnus.andersson at scilifelab.se>> wrote:
> Hello,
> 
> I am not normally using cctbx but I’m trying to run a script that imports modules as follows:
> 
> import sys,io,os
> import subprocess
> import numpy
> import pickle
> import math
> import pylab
> #import pymol
> import time
> import scipy
> import iotbx.pdb
> import cctbx
> import mmtbx.model
> from scipy.optimize import fmin, fmin_cg, leastsq
> from scipy.interpolate import interp1d
> import datetime
> from numpy.random import random_sample
> from cctbx.array_family import flex
> from scitbx.math import superpose
> 
> I have installed cctbx and run with cctbx.python.
> 
> How can I import scipy into the cctbx python?
> 
> Cheers,
> 
> Magnus
>  
> 
> ####
> Magnus Andersson, Docent, Ph.D.
> 
> Email: magnus.andersson at scilifelab.se <mailto:magnus.andersson at scilifelab.se>
> Phone: 0769469872
> 
> Mailing address:
> Science For Life Laboratory
> Alpha 6
> Box 1031
> 171 21 Solna
> 
> Visiting address:
> Tomtebodavägen 23A
> 171 65 Solna
> 
> 
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> 
> 
> 
> -- 
> -----------------------------------------------------------------
> P.H. Zwart
> Staff Scientist
> Molecular Biophysics and Integrated Bioimaging &
> Center for Advanced Mathematics for Energy Research Applications
> Lawrence Berkeley National Laboratories
> 1 Cyclotron Road, Berkeley, CA-94703, USA
> Cell: 510 289 9246 <tel:(510)%20289-9246>
> 
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####
Magnus Andersson, Docent, Ph.D.

Email: magnus.andersson at scilifelab.se
Phone: 0769469872

Mailing address:
Science For Life Laboratory
Alpha 6
Box 1031
171 21 Solna

Visiting address:
Tomtebodavägen 23A
171 65 Solna

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