[phenixbb] running phenix.validation from command line

Pavel Afonine pafonine at lbl.gov
Wed Mar 6 06:46:18 PST 2019

Hi Roberto,

I don't think we have it. I will double-check now. If we don't have it I 
will add it today so that it's available in tomorrow's build.


On 3/6/19 06:25, Roberto Marabini wrote:
> Hi,
>    I see that it is possible to  execute phenix.validation from 
> command line by typing:
>   phenix.validation_cryoem <path to>/5ni1.cif <path to>/molprobity.mrc 
> resolution=2.2
> The program runs smoothly and prints on  screen a few hundreds of lines.
> The more or less equivalent program in version 1.13 was 
> phenix.molprobity, when executed with the option pickle=True, 
> phenix.molprobity saved to the hard-disk a pkl file containing all data.
> Is there an equivalent flag for phenix.validation_cryoem? where is the 
> result of executing this shell being saved?
>    thanks
>   Roberto

More information about the phenixbb mailing list