[phenixbb] Phenix.refine question

[Boniecki, Michal]

I had similar problem and updating phenix to latest version helped


> On Mar 18, 2022, at 12:52 PM, lbetts0508 <laurie.betts0508 at gmail.com> wrote:
> 
> CAUTION: External to USask. Verify sender and use caution with links and attachments. Forward suspicious emails to phishing at usask.ca
> 
> I am refining a small protein crystal model with 1.3 A data, there is a Tyrosine that won't stay put where it looks to me it should go (see below in it's original position, in the negative density; I moved the ring into the positive Fo-Fc density).  After I move it into the positive density, save the coordinates, and do another refinement with the new coordinates, I find it right back in the negative density, even if I only refine ADP or OCC.  Is there some trivial reason this is happening, or can I tell it to not refine that residue?
> 
> https://docs.google.com/document/d/1RkZSH312q2Pimxb9gKLjibm1XbpsVpyzmrX4wGxrNDg/edit?usp=sharing
> 
> THanks
> 
> Laurie Betts
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org